blue #
= weekly pop chart peak
| 1 | Gettin Bass | 1990 |  |
| 2 | Not Tonight (Ladies Night) | 14 | Aug 1997 | |
| Lil' Kim Featuring Da Brat, Left Eye, Missy Misdemeanor Elliott And Angie Martinez |
| 3 | The Rain (Supa Dupa Fly) | Aug 1997 | |
| 4 | What About Us | Nov 1997 | |
| Total with Missy Elliott |
| 5 | Sock It 2 Me | Nov 1997 | |
| Missy Misdemeanor Elliott Featuring Da Brat |
| 6 | Beep Me 911 | Apr 1998 | |
| Missy Misdemeanor Elliott Featuring 702 And Magoo |
| 7 | Hit 'Em Wit Da Hee | Aug 1998 | |
| Missy Misdemeanor Elliott Featuring Lil Kim & Mocha |
| 8 | Make It Hot | 29 | Sep 1998 | |
| Nicole Featuring Missy Misdemeanor Elliott & Mocha |
| 9 | Here We Come | Nov 1998 | |
| Timbaland Featuring Missy Misdemeanor Elliott & Magoo |
| 10 | Trippin' | 18 | Jan 1999 | |
| Total Featuring Missy Elliott |
| 11 | She's A Bitch | May 1999 | |
| 12 | All N My Grill | Sep 1999 | |
| Missy Misdemeanor Elliott Featuring Big Boi Of OutKast & Nicole |
| 13 | Heartbreaker REMIX | Oct 1999 | |
| Mariah Carey With Da Brat, Missy Elliott & DJ Clue |
| 14 | Ya Di Ya | Nov 1999 | |
| Gina Thompson Featuring Missy Misdemeanor Elliott |
| 15 | Hot Boyz | 8 | Dec 1999 | |
| Missy Elliott |
| 16 | Take That | Jul 2000 | |
| Torrey Carter Featuring Missy Misdemeanor Elliott |
| 17 | Is That Your Chick (The Lost Verses) | Feb 2001 | |
| Memphis Bleek Featuring Jay-Z & Missy Elliott |
| 18 | Lick Shots | May 2001 | |
| 19 | Get Ur Freak On | 4 | Jun 2001 | |
| 20 | One Minute Man | 8 | Sep 2001 | |
| Missy Misdemeanor Elliott Featuring Ludacris |
| 21 | Son Of A Gun (I Betcha Think This Song Is About You) | 18 | Dec 2001 | |
| Janet Jackson Featuring Missy Elliott, P. Diddy And Carly Simon |
| 22 | Take Away | Feb 2002 | |
| Missy Misdemeanor Elliott Featuring Ginuwine & Tweet |
| 23 | Knoc | Mar 2002 | |
| Knoc-Turn'Al With Dr. Dre & Missy Misdemeanor Elliott |
| 24 | Oops (Oh My) | 6 | Mar 2002 | |
| Tweet Featuring Missy Elliott |
| 25 | 4 My People | Apr 2002 | |
| 26 | Burnin' Up | Sep 2002 | |
| Faith Evans Featuring Missy Misdemeanor Elliott |
| 27 | Work It | 1 | Nov 2002 | |
| 28 | Gossip Folks | 2 | Mar 2003 | |
| Missy Misdemeanor Elliott Featuring Ludacris |
| 29 | Pussycat | May 2003 | |
| 30 | Back In The Day | May 2003 | |
| Missy Misdemeanor Elliott Featuring Jay-Z |
| 31 | So Gone | 24 | Jun 2003 | |
| MonicaFeaturing Missy Elliott |
| 32 | (When Kim Say) Can You Hear Me Now? | Aug 2003 | |
| Lil Kim Featuring Missy Elliott |
| 33 | Cop That Shxx | Aug 2003 | |
| Timbaland & Magoo Featuring Missy Elliott |
| 34 | Pass That Dutch | Nov 2003 | |
| Missy Elliott |
| 35 | Party To Damascus | Nov 2003 | |
| Wyclef Jean Featuring Missy Elliott |
| 36 | I'm Really Hot | Mar 2004 | |
| Missy Elliott |
| 37 | Fighting Temptation | Jul 2004 | |
| Beyonce, Missy Elliott, MC Lyte and Free |
| 38 | Push | Sep 2004 | |
| Ghostface Killah Featuring Missy Elliott |
| 39 | Car Wash | 10 | Sep 2004 | |
| Christina Aguilera Featuring Missy Elliott |
| 40 | 1, 2 Step | 1 | Jan 2005 | |
| Ciara Featuring Missy Elliott |
| 41 | Turn Da Lights Off | Apr 2005 | |
| Tweet Featuring Missy Elliott |
| 42 | Free Yourself | Jul 2005 | |
| Fantasia Featuring Missy Elliott |
| 43 | Lose Control | 2 | Aug 2005 | |
| Missy Elliott Featuring Ciara & Fatman Scoop |
| 44 | Teary Eyed | Oct 2005 | |
| Missy Elliott |
| 45 | We Run This | May 2006 | |
| Missy Elliott |
| 46 | Do It | Sep 2007 | |
| Nelly Furtado Featuring Missy Elliott |
| 47 | Let It Go | 20 | Oct 2007 | |
| Keyshia Cole Featuring Missy Elliott And Lil Kim |
| 48 | Shake Your Pom Pom | Mar 2008 | |
| Missy Elliott |
| 49 | Ching-A-Ling | Mar 2008 | |
| Missy Elliott |
| 50 | Whatcha Think About That | Feb 2009 | |
| Pussycat Dolls Featuring Missy Elliott |
| 51 | Fast Car | Oct 2009 | |
| Queen Latifah Featuring Missy Elliott |
| 52 | Nobody's Perfect | Jul 2012 | |
| J Cole Featuring Missy Elliott |
| 53 | How Ya Doin' | Apr 2013 | |
| Little Mix Featuring Missy Elliott |
| 54 | Without Me | Jul 2013 | |
| Fantasia Featuring Kelly Rowland & Missy Elliott |
| 55 | I Deserve It | 2014 | |
| Faith Evans Featuring Missy Elliott & Sharaya J |